STRINGSTRING
tfx protein (Halalkalicoccus jeotgali) - STRING interaction network
"tfx" - Putative transcriptional regulator in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfxPutative transcriptional regulator (158 aa)    
Predicted Functional Partners:
C497_17497
Deoxyribonuclease/rho domain-containing protein (153 aa)
              0.857
C497_17492
Radical SAM domain-containing protein (330 aa)
 
          0.664
C497_18907
Hypothetical protein (197 aa)
   
          0.625
C497_10803
Hypothetical protein (116 aa)
   
          0.604
C497_02627
Hypothetical protein (196 aa)
   
          0.596
C497_13386
Hypothetical protein (145 aa)
   
          0.574
C497_11867
Phosphoesterase RecJ domain-containing protein (627 aa)
   
          0.572
C497_02652
Hypothetical protein (73 aa)
   
          0.567
C497_14482
H/ACA RNA-protein complex component Gar1 (75 aa)
   
          0.559
C497_17567
DEAD/DEAH box helicase domain-containing protein (689 aa)
   
          0.557
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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