STRINGSTRING
C497_16947 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_16947" - TRAP dicarboxylate transporter subunit DctP in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_16947TRAP dicarboxylate transporter subunit DctP (298 aa)    
Predicted Functional Partners:
C497_16957
TRAP dicarboxylate transporter subunit DctM (434 aa)
          0.893
C497_16952
Hypothetical protein (184 aa)
              0.684
C497_16937
Mannonate dehydratase (320 aa)
 
          0.518
C497_16052
Urea ABC transporter permease UrtB (295 aa)
 
          0.508
C497_16037
ABC transporter-like protein (228 aa)
 
          0.505
C497_16942
Short-chain dehydrogenase/reductase SDR (262 aa)
              0.459
C497_16047
Inner-membrane translocator (349 aa)
              0.446
C497_16962
Altronate dehydratase (395 aa)
              0.435
C497_16967
Dehydratase (102 aa)
              0.435
C497_16972
Altronate dehydratase-like protein (378 aa)
              0.435
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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