STRINGSTRING
C497_16172 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_16172" - DNA binding protein in Halalkalicoccus jeotgali
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_16172DNA binding protein (217 aa)    
Predicted Functional Partners:
C497_10298
Bacterio-opsin activator HTH domain-containing protein (214 aa)
   
          0.649
C497_18122
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (106 aa)
 
          0.623
C497_07419
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions (109 aa)
 
          0.620
C497_15927
DNA binding domain-containing protein (219 aa)
   
          0.606
C497_16162
N-methylhydantoinase B 2 (616 aa)
              0.605
C497_16167
N-methylhydantoinase A 2 (687 aa)
              0.605
C497_16157
Hypothetical protein (211 aa)
              0.576
C497_10513
Lysine exporter protein LysE/YggA (215 aa)
   
          0.506
C497_17492
Radical SAM domain-containing protein (330 aa)
   
          0.478
C497_07899
Hypothetical protein (373 aa)
   
          0.453
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
Server load: low (8%) [HD]