STRINGSTRING
C497_15403 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_15403" - AzlC family protein in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_15403AzlC family protein (252 aa)    
Predicted Functional Partners:
C497_15408
Branched-chain amino acid transport (103 aa)
 
        0.961
C497_15388
DNA-directed RNA polymerase subunit E’ (194 aa)
              0.715
spt4
DNA-directed RNA polymerase subunit E, RpoE2; Stimulates transcription elongation (65 aa)
              0.715
C497_15398
Hypothetical protein (182 aa)
              0.715
eif2g
Translation initiation factor IF-2 subunit gamma; eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA (411 aa)
              0.706
C497_15383
Putative RNA-binding protein containing PIN domain-containing protein (126 aa)
              0.706
C497_15373
Hypothetical protein (184 aa)
              0.491
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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