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rps8e protein (Halalkalicoccus jeotgali) - STRING interaction network
"rps8e" - 30S ribosomal protein S8e in Halalkalicoccus jeotgali
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps8e30S ribosomal protein S8e (123 aa)    
Predicted Functional Partners:
rps6e
30S ribosomal protein S6e (139 aa)
   
  0.999
rps4e
30S ribosomal protein S4e (236 aa)
   
  0.999
rps3ae
30S ribosomal protein S3Ae (194 aa)
   
  0.999
rps3
30S ribosomal protein S3P; Binds the lower part of the 30S subunit head (302 aa)
     
  0.999
rps19p
30S ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA (141 aa)
     
  0.999
rps17p
30S ribosomal protein S17P (143 aa)
     
  0.999
C497_08814
50S ribosomal protein L15e (190 aa)
   
  0.999
rps17E
30S ribosomal protein S17e (64 aa)
   
  0.999
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (153 aa)
   
  0.999
rps8
30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (130 aa)
     
  0.999
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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