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rps27ae protein (Halalkalicoccus jeotgali) - STRING interaction network
"rps27ae" - 30S ribosomal protein S27ae in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps27ae30S ribosomal protein S27ae (44 aa)    
Predicted Functional Partners:
rps24e
30S ribosomal protein S24ER (105 aa)
   
  0.991
rps6e
30S ribosomal protein S6e (139 aa)
   
  0.948
rps8e
30S ribosomal protein S8e (123 aa)
     
  0.932
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (153 aa)
     
  0.929
rps27e
30S ribosomal protein S27E (57 aa)
     
  0.929
rps7
30S ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center (204 aa)
     
  0.926
rps8
30S ribosomal protein S8P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit (130 aa)
     
  0.926
rps15
30S ribosomal protein S15P (154 aa)
   
  0.922
rps10p
30S ribosomal protein S10P; Involved in the binding of tRNA to the ribosomes (102 aa)
     
  0.921
C497_09133
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (108 aa)
     
  0.921
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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