STRINGSTRING
C497_04147 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_04147" - Xylose dehydrogenase in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_04147Xylose dehydrogenase (354 aa)    
Predicted Functional Partners:
C497_17022
Oxidoreductase domain-containing protein (355 aa)
   
   
 
0.806
C497_16107
Oxidoreductase domain-containing protein (356 aa)
   
   
 
0.805
C497_05707
AP-endonuclease/AP-lyase (323 aa)
 
   
  0.738
HacjB3_15230
Putative zinc-binding dehydrogenase (330 aa)
   
 
  0.654
C497_09238
Alcohol dehydrogenase GroES domain-containing protein (358 aa)
   
 
  0.654
C497_14277
Formaldehyde dehydrogenase (386 aa)
   
 
  0.654
C497_05712
Alcohol dehydrogenase GroES domain-containing protein (381 aa)
   
 
  0.654
C497_16977
Zinc-binding dehydrogenase (341 aa)
   
 
  0.654
C497_04152
Hypothetical protein (125 aa)
              0.638
C497_12267
Oxidoreductase domain-containing protein (363 aa)
   
          0.631
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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