STRINGSTRING
C497_04887 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_04887" - Hypothetical protein in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_04887Hypothetical protein (263 aa)    
Predicted Functional Partners:
C497_04882
S-methyl-5-thioadenosine phosphorylase (242 aa)
              0.729
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate (210 aa)
              0.672
C497_09453
Hypothetical protein (237 aa)
   
          0.641
C497_07829
Hypothetical protein (242 aa)
 
          0.626
C497_05772
Hypothetical protein (278 aa)
 
          0.621
rnp2
Ribonuclease P-like protein; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends (161 aa)
   
          0.615
C497_09953
Replication factor A (482 aa)
   
          0.608
C497_04802
Hypothetical protein (292 aa)
   
          0.608
C497_14672
Hypothetical protein (487 aa)
   
          0.588
C497_02932
Pyruvoyl-dependent arginine decarboxylase (155 aa)
   
          0.587
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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