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C497_05047 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_05047" - ATPase-like protein in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_05047ATPase-like protein (585 aa)    
Predicted Functional Partners:
mre11
Metallophosphoesterase; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Mre11 binds to DSB ends and has both double-stranded 3’-5’ exonuclease activity and single-stranded endonuclease activity (422 aa)
 
     
  0.847
rad50
Chromosome segregation protein; Part of the Rad50/Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50/Mre11 complex (890 aa)
 
     
  0.838
C497_05032
Hypothetical protein (416 aa)
 
          0.782
C497_05052
UpsA domain-containing protein (143 aa)
              0.761
C497_18317
DEAD_2 domain-containing protein (725 aa)
 
     
  0.720
C497_05042
Hypothetical protein (114 aa)
              0.683
C497_09953
Replication factor A (482 aa)
   
     
  0.653
C497_11328
Hypothetical protein (225 aa)
   
          0.652
C497_04802
Hypothetical protein (292 aa)
 
          0.651
rpoH
DNA-directed RNA polymerase subunit H (60 aa)
   
          0.650
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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