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C497_05162 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_05162" - TatD-related deoxyribonuclease in Halalkalicoccus jeotgali
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_05162TatD-related deoxyribonuclease (277 aa)    
Predicted Functional Partners:
C497_05167
Hypothetical protein (157 aa)
 
          0.872
C497_05157
Hypothetical protein (194 aa)
 
          0.790
C497_09393
Radical SAM domain-containing protein (582 aa)
   
          0.640
C497_13418
Hypothetical protein (95 aa)
   
          0.638
C497_19102
Peptidase A24A prepilin type IV (326 aa)
   
          0.635
ribK
CTP-dependent riboflavin kinase; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) (232 aa)
   
          0.632
rps17E
30S ribosomal protein S17e (64 aa)
   
          0.626
C497_07414
Hypothetical protein (285 aa)
   
          0.614
C497_13391
Hypothetical protein (77 aa)
   
          0.614
C497_13166
Hypothetical protein (492 aa)
   
          0.613
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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