STRINGSTRING
C497_05557 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_05557" - Transcriptional regulator TrmB in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_05557Transcriptional regulator TrmB (350 aa)    
Predicted Functional Partners:
HacjB3_07140
Hypothetical protein (242 aa)
 
          0.709
C497_05567
Hypothetical protein (360 aa)
              0.648
C497_05562
Hypothetical protein (66 aa)
              0.648
C497_12002
Hypothetical protein (390 aa)
   
          0.618
C497_11583
Peptidase M28 (436 aa)
   
          0.615
C497_09223
Hypothetical protein (276 aa)
   
          0.601
C497_18942
Hypothetical protein (125 aa)
   
          0.599
C497_08809
Transcriptional regulator TrmB (261 aa)
   
     
  0.598
HacjB3_04550
Peptidase M28 (433 aa)
   
          0.586
C497_05127
GCN5-like N-acetyltransferase (162 aa)
   
          0.583
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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