STRINGSTRING
C497_05707 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_05707" - AP-endonuclease/AP-lyase in Halalkalicoccus jeotgali
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_05707AP-endonuclease/AP-lyase (323 aa)    
Predicted Functional Partners:
C497_05717
Oxidoreductase domain-containing protein (369 aa)
 
   
  0.861
C497_14987
Oxidoreductase (354 aa)
 
   
  0.848
C497_05617
Oxidoreductase (361 aa)
 
   
  0.847
C497_12267
Oxidoreductase domain-containing protein (363 aa)
 
   
  0.762
C497_16107
Oxidoreductase domain-containing protein (356 aa)
 
   
  0.754
C497_04592
Oxidoreductase domain-containing protein (435 aa)
 
   
  0.742
C497_17022
Oxidoreductase domain-containing protein (355 aa)
 
   
  0.739
C497_04147
Xylose dehydrogenase (354 aa)
 
   
  0.738
C497_17672
Oxidoreductase domain-containing protein (325 aa)
   
   
  0.697
C497_12771
Hypothetical protein (238 aa)
 
          0.555
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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