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rtcB protein (Halalkalicoccus jeotgali) - STRING interaction network
"rtcB" - Hypothetical protein in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtcBHypothetical protein (486 aa)    
Predicted Functional Partners:
C497_05757
Hypothetical protein (137 aa)
 
  0.936
C497_05747
Hypothetical protein (195 aa)
              0.706
C497_08993
Adenylosuccinate lyase (464 aa)
   
   
  0.631
C497_08294
Methylthioadenosine phosphorylase (284 aa)
         
  0.594
C497_04422
Putative deoxyhypusine synthase (360 aa)
   
   
  0.592
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val) (299 aa)
   
   
  0.589
HacjB3_07345
Sodium/hydrogen exchanger (410 aa)
   
        0.540
trpS
tryptophanyl-tRNA synthetase (521 aa)
   
   
  0.424
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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