STRINGSTRING
C497_13603 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_13603" - Hypothetical protein in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_13603Hypothetical protein (684 aa)    
Predicted Functional Partners:
C497_13598
Histone acetyltransferase, ELP3 family protein (551 aa)
 
          0.791
C497_13608
Hypothetical protein (206 aa)
              0.695
tdk
Thymidine kinase (179 aa)
              0.674
C497_02627
Hypothetical protein (196 aa)
   
          0.644
C497_14082
RNA polymerase Rpb4 (118 aa)
 
          0.641
pelA
Translation factor pelota; May function in recognizing stalled ribosomes, interact with stem-loop structures in stalled mRNA molecules, and effect endonucleolytic cleavage of the mRNA. May play a role in the release non-functional ribosomes and degradation of damaged mRNAs. Has endoribonuclease activity (355 aa)
 
          0.640
rnp3
Ribonuclease P; Part of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5’-ends (233 aa)
   
          0.639
C497_18542
Hef nuclease (799 aa)
   
     
  0.629
C497_09768
Hypothetical protein (215 aa)
   
          0.628
C497_14127
Hypothetical protein (294 aa)
 
          0.626
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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