STRINGSTRING
C497_13503 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_13503" - snRNP-like protein in Halalkalicoccus jeotgali
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_13503snRNP-like protein (61 aa)    
Predicted Functional Partners:
fusA
Elongation factor EF-2; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (729 aa)
     
  0.989
rpl7ae
50S ribosomal protein L7Ae; Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C’/D’ sRNAs (120 aa)
   
  0.984
C497_19234
DEAD/DEAH box helicase domain-containing protein (778 aa)
     
  0.978
hel308
Ski2-like helicase; DNA-dependent ATPase and 3’-5’ DNA helicase that may be involved in repair of stalled replication forks (763 aa)
       
  0.978
C497_14932
Nucleolar protein-like protein (276 aa)
     
  0.978
C497_15678
Peptidylprolyl isomerase (180 aa)
     
  0.966
rpl37e
50S ribosomal protein L37e; Binds to the 23S rRNA (58 aa)
   
   
  0.926
C497_04517
Cold shock protein (64 aa)
     
  0.906
C497_16722
Cold-shock DNA-binding domain-containing protein (68 aa)
     
    0.906
C497_18632
Cold shock protein (64 aa)
     
    0.906
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
Server load: low (9%) [HD]