STRINGSTRING
C497_13478 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_13478" - DNA binding domain-containing protein in Halalkalicoccus jeotgali
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_13478DNA binding domain-containing protein (164 aa)    
Predicted Functional Partners:
C497_13473
alanyl-tRNA synthetase (408 aa)
 
        0.807
C497_13468
acyl-CoA dehydrogenase (372 aa)
              0.658
C497_11413
Hypothetical protein (85 aa)
   
          0.634
gch3
GTP cyclohydrolase III; Catalyzes the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP. Also has an independent pyrophosphate phosphohydrolase activity (257 aa)
   
          0.629
HacjB3_13405
Hypothetical protein (144 aa)
   
          0.606
C497_17632
Hypothetical protein (189 aa)
   
          0.603
tfe
Transcription factor TFIIE subunit alpha; Transcription factor that plays a role in the activation of archaeal genes transcribed by RNA polymerase. Facilitates transcription initiation by enhancing TATA-box recognition by TATA-box-binding protein (Tbp), and transcription factor B (Tfb) and RNA polymerase recruitment. Not absolutely required for transcription in vitro, but particularly important in cases where Tbp or Tfb function is not optimal. It dynamically alters the nucleic acid-binding properties of RNA polymerases by stabilizing the initiation complex and destabilizing elongation [...] (175 aa)
 
        0.600
C497_18942
Hypothetical protein (125 aa)
   
          0.591
C497_04832
Hypothetical protein (299 aa)
 
        0.589
C497_18892
Cobalt ABC transporter permease (232 aa)
   
          0.585
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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