STRINGSTRING
C497_10808 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_10808" - XRE family transcriptional regulator in Halalkalicoccus jeotgali
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_10808XRE family transcriptional regulator (179 aa)    
Predicted Functional Partners:
C497_10803
Hypothetical protein (116 aa)
 
          0.806
C497_10813
Glyoxalase/bleomycin resistance protein/dioxygenase (307 aa)
              0.734
rpoH
DNA-directed RNA polymerase subunit H (60 aa)
   
          0.623
C497_13418
Hypothetical protein (95 aa)
   
          0.617
ribK
CTP-dependent riboflavin kinase; Catalyzes the CTP-dependent phosphorylation of riboflavin (vitamin B2) to form flavin mononucleotide (FMN) (232 aa)
   
          0.612
C497_05162
TatD-related deoxyribonuclease (277 aa)
   
          0.605
C497_11328
Hypothetical protein (225 aa)
   
          0.572
C497_17647
Hypothetical protein (347 aa)
   
          0.564
C497_18317
DEAD_2 domain-containing protein (725 aa)
   
          0.555
C497_16532
Hypothetical protein (339 aa)
   
          0.553
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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