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rps27e protein (Halalkalicoccus jeotgali) - STRING interaction network
"rps27e" - 30S ribosomal protein S27E in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rps27e30S ribosomal protein S27E (57 aa)    
Predicted Functional Partners:
rps17E
30S ribosomal protein S17e (64 aa)
 
  0.999
rps24e
30S ribosomal protein S24ER (105 aa)
   
  0.999
rps4e
30S ribosomal protein S4e (236 aa)
   
  0.999
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit (153 aa)
 
  0.999
rps6e
30S ribosomal protein S6e (139 aa)
   
  0.999
rps28e
30S ribosomal protein S28e (74 aa)
   
  0.999
rps3ae
30S ribosomal protein S3Ae (194 aa)
     
  0.999
rps3
30S ribosomal protein S3P; Binds the lower part of the 30S subunit head (302 aa)
     
  0.999
rps13
30S ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement (168 aa)
     
  0.999
rpl44e
50S ribosomal protein L44e; Binds to the 23S rRNA (92 aa)
 
  0.999
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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