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C497_09393 protein (Halalkalicoccus jeotgali) - STRING interaction network
"C497_09393" - Radical SAM domain-containing protein in Halalkalicoccus jeotgali
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
C497_09393Radical SAM domain-containing protein (582 aa)    
Predicted Functional Partners:
C497_09398
Phosphodiesterase (163 aa)
 
          0.838
C497_13166
Hypothetical protein (492 aa)
 
          0.763
C497_05162
TatD-related deoxyribonuclease (277 aa)
   
          0.640
C497_11008
Phosphoesterase RecJ domain-containing protein (494 aa)
 
          0.608
C497_09408
Putative Hsp20 (154 aa)
              0.599
C497_09403
Hypothetical protein (52 aa)
              0.592
C497_05137
Putative transcriptional regulator, containing DNA-binding HTH domain (240 aa)
   
          0.578
rps17E
30S ribosomal protein S17e (64 aa)
   
          0.567
C497_13418
Hypothetical protein (95 aa)
   
          0.562
C497_13386
Hypothetical protein (145 aa)
   
          0.525
Your Current Organism:
Halalkalicoccus jeotgali
NCBI taxonomy Id: 795797
Other names: H. jeotgali, H. jeotgali B3, Halalkalicoccus, Halalkalicoccus Xue et al. 2005, Halalkalicoccus jeotgali, Halalkalicoccus jeotgali B3, Halalkalicoccus jeotgali DSM 18796, Halalkalicoccus jeotgali JCM 14584, Halalkalicoccus jeotgali Roh et al. 2007, Halalkalicoccus jeotgali str. B3, Halalkalicoccus jeotgali strain B3
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