STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLF_101524Uncharacterized protein. (119 aa)    
Predicted Functional Partners:
CDC73
Parafibromin.
    
 0.719
PAF1
RNA polymerase II-associated factor 1-like protein.
    
 0.705
W08D2.5
Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.
    
 0.699
SKIV2L
Helicase SKI2W.
    
 0.699
ctr9
RNA polymerase-associated protein CTR9-like protein.
    
 0.682
CSKR_2411s
Cytochrome c; Electron carrier protein. The oxidized form of the cytochrome c heme group can accept an electron from the heme group of the cytochrome c1 subunit of cytochrome reductase. Cytochrome c then transfers this electron to the cytochrome oxidase complex, the final protein carrier in the mitochondrial electron-transport chain.
    
 0.646
Ddb1
DNA damage-binding protein 1.
    
 0.635
ddx20
Putative ATP-dependent RNA helicase DDX20.
    
 0.628
CUL4A
Cullin-4A; Belongs to the cullin family.
    
  0.600
HBS1L
HBS1-like protein.
    
 0.591
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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