STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLF_102229UPF0568 protein C14orf166 homolog. (254 aa)    
Predicted Functional Partners:
DDX1
ATP-dependent RNA helicase DDX1.
   
 0.983
rtcb
tRNA-splicing ligase RtcB-like protein.
   
 0.943
Fam98a
Protein FAM98A.
    
 
 0.925
Ddx1
ATP-dependent RNA helicase Ddx1.
   
 0.915
SLC25A20
Mitochondrial carnitine/acylcarnitine carrier protein; Belongs to the mitochondrial carrier (TC 2.A.29) family.
 
      0.722
Slc2a13
Proton myo-inositol cotransporter; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 0.580
SLC2A6
Solute carrier family 2.
    
 0.580
CLF_102051
Uncharacterized protein.
    
 0.580
Tret1
Facilitated trehalose transporter Tret1; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
    
 0.580
ZBTB8OS
Protein archease.
     
 0.543
Your Current Organism:
Clonorchis sinensis
NCBI taxonomy Id: 79923
Other names: C. sinensis, oriental liver fluke
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