STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060VVU2Uncharacterized protein. (1050 aa)    
Predicted Functional Partners:
A0A060WZ23
Ubiquitin-like domain-containing protein.
   
 0.984
A0A060YFT4
Ubiquitin-like domain-containing protein.
   
 0.984
UBIM
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.960
UBIM-2
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.960
A0A060XFX2
Uncharacterized protein.
    
 0.956
A0A060XN82
RBR-type E3 ubiquitin transferase.
    
 0.956
A0A060ZDZ5
Uncharacterized protein.
    
 0.949
UBIQ
Ubiquitin.
    
 0.949
Q9PT09_ONCMY
Ubiquitin.
    
 0.949
A0A060WHG0
Ubiquitin-like domain-containing protein.
   
 0.948
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.