STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060W0U1BTB domain-containing protein; Belongs to the potassium channel family. (483 aa)    
Predicted Functional Partners:
UBIM
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.976
UBIM-2
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.976
A0A060XGD5
Uncharacterized protein.
   
 0.928
A0A060XSL9
Uncharacterized protein.
  
 0.919
A0A060WTV0
Uncharacterized protein.
  
 
 0.890
A0A060Z3Y3
Uncharacterized protein.
   
 
 0.884
A0A060YCL2
Uncharacterized protein.
   
 
 0.881
A0A060Y8R1
Ribosomal_L23eN domain-containing protein; Belongs to the universal ribosomal protein uL23 family.
  
 0.875
A0A060YWQ1
Ribosomal_L23eN domain-containing protein.
  
 0.875
A0A060X8B2
TRASH domain-containing protein.
  
 0.869
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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