A0A060WS15 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060WS15

Uncharacterized protein. (526 aa)

Predicted Functional Partners:

A0A060VPU2

0.985

A0A060XIH3

0.965

A0A060XJK9

0.965

A0A060Y6L7

0.958

A0A060YWC5

0.958

A0A060W6M2

0.928

A0A060WH25

0.919

A0A060XAW2

0.919

A0A060XHG3

0.919

A0A060XIP7

0.919

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A060VPU2	A0A060W6M2	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A060VPU2	A0A060WS15	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A060VPU2	A0A060XIH3	Uncharacterized protein.	Uncharacterized protein.	0.410
A0A060VPU2	A0A060XJK9	Uncharacterized protein.	Uncharacterized protein.	0.410
A0A060VPU2	A0A060Y6L7	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A060VPU2	A0A060YWC5	Uncharacterized protein.	Uncharacterized protein.	0.968
A0A060W6M2	A0A060VPU2	Uncharacterized protein.	Uncharacterized protein.	0.828
A0A060W6M2	A0A060WS15	Uncharacterized protein.	Uncharacterized protein.	0.928
A0A060W6M2	A0A060XIH3	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A060W6M2	A0A060XJK9	Uncharacterized protein.	Uncharacterized protein.	0.408
A0A060W6M2	A0A060Y6L7	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A060W6M2	A0A060YWC5	Uncharacterized protein.	Uncharacterized protein.	0.691
A0A060WH25	A0A060WS15	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.919
A0A060WH25	A0A060XIH3	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.998
A0A060WH25	A0A060XJK9	Nup214_FG domain-containing protein.	Uncharacterized protein.	0.998
A0A060WS15	A0A060VPU2	Uncharacterized protein.	Uncharacterized protein.	0.985
A0A060WS15	A0A060W6M2	Uncharacterized protein.	Uncharacterized protein.	0.928
A0A060WS15	A0A060WH25	Uncharacterized protein.	Nup214_FG domain-containing protein.	0.919
A0A060WS15	A0A060XAW2	Uncharacterized protein.	Nup214_FG domain-containing protein.	0.919
A0A060WS15	A0A060XHG3	Uncharacterized protein.	Uncharacterized protein.	0.919