STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060Y5D0Uncharacterized protein. (110 aa)    
Predicted Functional Partners:
A0A060XGB8
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.999
A0A060XPV5
Uncharacterized protein.
   
 0.999
A0A060XUI1
Uncharacterized protein.
    
 0.999
A0A060Y502
Small nuclear ribonucleoprotein G.
   
 0.999
A0A060ZF79
Uncharacterized protein.
   
 0.999
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
W5S1H5_ONCMY
Pre-mRNA branch site protein p14-1.
   
 0.999
A0A060XZM9
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.998
A0A060XGC8
Small nuclear ribonucleoprotein Sm D2.
   
 0.997
A0A060Y7J4
Sm domain-containing protein.
   
 0.997
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.