STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A060YR91E2F_TDP domain-containing protein. (170 aa)    
Predicted Functional Partners:
A0A060W674
Transcription factor.
  
 0.978
A0A060XDS3
Transcription factor.
  
 0.977
A0A060X153
Uncharacterized protein.
  
 0.976
A0A060WXZ7
RB_A domain-containing protein.
   
 0.975
A0A060X2Q7
Uncharacterized protein.
   
 0.975
A0A061AED7
Uncharacterized protein.
   
 0.966
A0A060W4Z3
Uncharacterized protein.
   
 0.952
A0A060Z6P6
DUF3452 domain-containing protein.
   
 0.952
A0A060YDJ1
Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.
   
 0.927
A0A060WAR3
Cyclin N-terminal domain-containing protein; Belongs to the cyclin family.
   
 0.925
Your Current Organism:
Oncorhynchus mykiss
NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.