A0A060Z421 protein (Oncorhynchus mykiss) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A060Z421

Rhodanese domain-containing protein. (131 aa)

Predicted Functional Partners:

A0A060X6J3

0.971

A0A060VUH5

0.965

A0A060VXZ6

0.943

A0A060WT51

0.938

A0A060YL47

0.938

RM21

0.935

A0A060YHL7

0.929

A0A060VQW1

0.928

A0A060YXM7

0.927

A0A060YV07

0.926

Your Current Organism:

Oncorhynchus mykiss

NCBI taxonomy Id: 8022
Other names: O. mykiss, Oncorhynchus nerka mykiss, Parasalmo mykiss, Salmo mykiss, rainbow trout

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A060VQW1	A0A060VXZ6	A0A060VQW1	A0A060VXZ6	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.950
A0A060VQW1	A0A060X6J3	A0A060VQW1	A0A060X6J3	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.962
A0A060VQW1	A0A060YHL7	A0A060VQW1	A0A060YHL7	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.999
A0A060VQW1	A0A060YV07	A0A060VQW1	A0A060YV07	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.999
A0A060VQW1	A0A060YXM7	A0A060VQW1	A0A060YXM7	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Uncharacterized protein.	0.999
A0A060VQW1	A0A060Z421	A0A060VQW1	A0A060Z421	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	Rhodanese domain-containing protein.	0.928
A0A060VQW1	RM21	A0A060VQW1	C1BGA9	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	39S ribosomal protein L21, mitochondrial.	0.999
A0A060VUH5	A0A060WT51	A0A060VUH5	A0A060WT51	Cytochrome b5 heme-binding domain-containing protein.	Aminotran_5 domain-containing protein.	0.663
A0A060VUH5	A0A060X6J3	A0A060VUH5	A0A060X6J3	Cytochrome b5 heme-binding domain-containing protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.670
A0A060VUH5	A0A060YL47	A0A060VUH5	A0A060YL47	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.663
A0A060VUH5	A0A060YV07	A0A060VUH5	A0A060YV07	Cytochrome b5 heme-binding domain-containing protein.	Uncharacterized protein.	0.451
A0A060VUH5	A0A060Z421	A0A060VUH5	A0A060Z421	Cytochrome b5 heme-binding domain-containing protein.	Rhodanese domain-containing protein.	0.965
A0A060VXZ6	A0A060VQW1	A0A060VXZ6	A0A060VQW1	Uncharacterized protein.	KOW domain-containing protein; Belongs to the universal ribosomal protein uL24 family.	0.950
A0A060VXZ6	A0A060X6J3	A0A060VXZ6	A0A060X6J3	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.995
A0A060VXZ6	A0A060YHL7	A0A060VXZ6	A0A060YHL7	Uncharacterized protein.	Uncharacterized protein.	0.918
A0A060VXZ6	A0A060YV07	A0A060VXZ6	A0A060YV07	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A060VXZ6	A0A060YXM7	A0A060VXZ6	A0A060YXM7	Uncharacterized protein.	Uncharacterized protein.	0.945
A0A060VXZ6	A0A060Z421	A0A060VXZ6	A0A060Z421	Uncharacterized protein.	Rhodanese domain-containing protein.	0.943
A0A060VXZ6	RM21	A0A060VXZ6	C1BGA9	Uncharacterized protein.	39S ribosomal protein L21, mitochondrial.	0.976
A0A060WT51	A0A060VUH5	A0A060WT51	A0A060VUH5	Aminotran_5 domain-containing protein.	Cytochrome b5 heme-binding domain-containing protein.	0.663