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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC115196787C-factor-like. (279 aa)    
Predicted Functional Partners:
LOC115154304
Dehydrogenase/reductase SDR family member 11-like.
   
 
 0.598
dhrs7b
Dehydrogenase/reductase 7B.
   
 
 0.598
LOC115171449
Dehydrogenase/reductase SDR family member 7C-B-like.
   
 
 0.596
LOC115202806
Dehydrogenase/reductase SDR family member 7C-B-like.
   
 
 0.596
LOC115169724
Retinol dehydrogenase 10-B-like.
    
 
 0.585
rdh10
Retinol dehydrogenase 10.
    
 
 0.585
LOC115201689
Tryptase-like.
      
 0.546
RIMBP2
RIMS binding protein 2.
      
 0.546
LOC115206329
Calfacilitin-like.
      
 0.545
TLCD1
TLC domain containing 1.
      
 0.545
Your Current Organism:
Salmo trutta
NCBI taxonomy Id: 8032
Other names: S. trutta, river trout
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