STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSGMOP00000004896DEAD (Asp-Glu-Ala-Asp) box helicase 42. (852 aa)    
Predicted Functional Partners:
ENSGMOP00000007216
Splicing factor 3b, subunit 1.
   
 0.999
ENSGMOP00000008713
Splicing factor 3b, subunit 3.
   
 0.995
ENSGMOP00000014241
PHD finger protein 5A.
    
 0.985
sf3b5
Splicing factor 3b subunit 5.
    
 0.984
ENSGMOP00000002653
Splicing factor 3b, subunit 4.
    
 0.979
ENSGMOP00000013048
Splicing factor 3a, subunit 2.
    
 0.979
ENSGMOP00000012989
Splicing factor 3b, subunit 2.
   
 0.974
sf3b6
Splicing factor 3b subunit 6.
    
  0.957
DHX15
DEAH-box helicase 15.
  
 0.892
ENSGMOP00000015621
DEAH (Asp-Glu-Ala-His) box helicase 15.
  
 0.892
Your Current Organism:
Gadus morhua
NCBI taxonomy Id: 8049
Other names: Atlantic cod, G. morhua
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.