STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab33bRAB33B, member RAS oncogene family a. (240 aa)    
Predicted Functional Partners:
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.994
ATG16L2
Autophagy related 16 like 2.
    
 0.991
LOC105927564
Zgc:101559.
  
  
 
0.948
ENSFHEP00000012132
Uncharacterized protein.
  
  
 
0.942
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
    
 0.891
trappc1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.836
trappc2
Trafficking protein particle complex subunit 2.
    
 0.836
tbc1d25
TBC1 domain family, member 25.
     
 0.835
LOC105920484
Trafficking protein particle complex subunit 6B.
   
 0.826
trappc4
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 0.826
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.