STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105938153Doublesex and mab-3 related transcription factor 1. (324 aa)    
Predicted Functional Partners:
LOC105936190
SRY-box transcription factor 9b.
    
 0.856
amh
Anti-Mullerian hormone.
      
 0.814
SOX8
SRY-box transcription factor 8.
    
 0.807
kptn
Kaptin (actin binding protein).
    
 0.788
depdc5
DEP domain containing 5.
    
 0.775
wdr24
WD repeat domain 24.
    
 0.772
wdr59
WD repeat domain 59.
    
 0.772
LOC105939122
HMG box domain-containing protein.
    
 0.736
LOC105916600
Cytochrome P450, family 19, subfamily A, polypeptide 1a; Belongs to the cytochrome P450 family.
      
 0.735
LOC105930872
SRY-box transcription factor 9a.
    
 0.725
Your Current Organism:
Fundulus heteroclitus
NCBI taxonomy Id: 8078
Other names: Atlantic killifish, F. heteroclitus, killifish, mummichog
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.