STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC103466497Bestrophin homolog; Forms chloride channels; Belongs to the bestrophin family. (728 aa)    
Predicted Functional Partners:
tmem98
Transmembrane protein 98.
      
 0.501
LOC103472858
Recoverin 3.
   
  
 0.482
LOC103478050
Recoverin 2.
   
  
 0.481
ENSPREP00000031431
Glutamine synthetase.
    
 
 0.481
rcvrn
Recoverin a.
   
  
 0.475
LOC103479587
Glutamine synthetase.
    
 
 0.461
LOC103463995
Glutamine synthetase.
    
 
 0.461
prss56
Serine protease 56; Belongs to the peptidase S1 family.
      
 0.459
pelo
Protein pelota homolog; May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non- functional ribosomes and degrade damaged mRNAs.
 
      0.417
Your Current Organism:
Poecilia reticulata
NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.