pbxip1 protein (Poecilia reticulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

pbxip1

Pre-B-cell leukemia homeobox interacting protein 1b. (865 aa)

Predicted Functional Partners:

guk1

0.686

LOC103464121

0.686

EIF4ENIF1

0.575

lenep

0.550

CHRNA9

0.549

LOC103471188

0.544

LOC103470449

0.522

Znf518b

0.496

arhgap11a

0.481

mdc1

0.478

Your Current Organism:

Poecilia reticulata

NCBI taxonomy Id: 8081
Other names: Acanthophacelus reticulata, P. reticulata, Poecilia (Acanthophacelus) reticulata, Poecilia latipinna reticulata, guppy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CHRNA9	pbxip1	ENSPREP00000002791	ENSPREP00000025251	Cholinergic receptor nicotinic alpha 9 subunit.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.549
EIF4ENIF1	LOC103464121	ENSPREP00000003290	ENSPREP00000023719	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Guanylate kinase 1b.	0.579
EIF4ENIF1	LOC103470449	ENSPREP00000003290	ENSPREP00000032410	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Lysine (K)-specific demethylase 2Aa.	0.579
EIF4ENIF1	guk1	ENSPREP00000003290	ENSPREP00000011441	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Guanylate kinase 1a.	0.579
EIF4ENIF1	pbxip1	ENSPREP00000003290	ENSPREP00000025251	Eukaryotic translation initiation factor 4E nuclear import factor 1.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.575
LOC103464121	EIF4ENIF1	ENSPREP00000023719	ENSPREP00000003290	Guanylate kinase 1b.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.579
LOC103464121	LOC103470449	ENSPREP00000023719	ENSPREP00000032410	Guanylate kinase 1b.	Lysine (K)-specific demethylase 2Aa.	0.513
LOC103464121	guk1	ENSPREP00000023719	ENSPREP00000011441	Guanylate kinase 1b.	Guanylate kinase 1a.	0.901
LOC103464121	pbxip1	ENSPREP00000023719	ENSPREP00000025251	Guanylate kinase 1b.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.686
LOC103470449	EIF4ENIF1	ENSPREP00000032410	ENSPREP00000003290	Lysine (K)-specific demethylase 2Aa.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.579
LOC103470449	LOC103464121	ENSPREP00000032410	ENSPREP00000023719	Lysine (K)-specific demethylase 2Aa.	Guanylate kinase 1b.	0.513
LOC103470449	guk1	ENSPREP00000032410	ENSPREP00000011441	Lysine (K)-specific demethylase 2Aa.	Guanylate kinase 1a.	0.513
LOC103470449	pbxip1	ENSPREP00000032410	ENSPREP00000025251	Lysine (K)-specific demethylase 2Aa.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.522
LOC103471188	lenep	ENSPREP00000010347	ENSPREP00000025284	Germ cell nuclear acidic peptidase.	Lens epithelial protein.	0.549
LOC103471188	pbxip1	ENSPREP00000010347	ENSPREP00000025251	Germ cell nuclear acidic peptidase.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.544
Znf518b	mdc1	ENSPREP00000020453	ENSPREP00000019394	Uncharacterized protein.	Uncharacterized protein.	0.500
Znf518b	pbxip1	ENSPREP00000020453	ENSPREP00000025251	Uncharacterized protein.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.496
arhgap11a	mdc1	ENSPREP00000029836	ENSPREP00000019394	Rho GTPase activating protein 11A.	Uncharacterized protein.	0.426
arhgap11a	pbxip1	ENSPREP00000029836	ENSPREP00000025251	Rho GTPase activating protein 11A.	Pre-B-cell leukemia homeobox interacting protein 1b.	0.481
guk1	EIF4ENIF1	ENSPREP00000011441	ENSPREP00000003290	Guanylate kinase 1a.	Eukaryotic translation initiation factor 4E nuclear import factor 1.	0.579