STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rereArginine-glutamic acid dipeptide (RE) repeats a. (1472 aa)    
Predicted Functional Partners:
UNC79
Unc-79 homolog, NALCN channel complex subunit.
      
 0.653
nr2e1
Nuclear receptor subfamily 2, group E, member 1.
    
 0.571
NR2E3
Nuclear receptor subfamily 2 group E member 3.
    
 0.571
LOC102229583
Nuclear receptor subfamily 2, group E, member 3.
    
 0.571
LOC102217038
FAT atypical cadherin 3b.
    
 0.552
fat3
FAT atypical cadherin 3a.
    
 0.552
fat2
FAT atypical cadherin 2.
    
 0.477
fat1
FAT atypical cadherin 1a.
    
 0.477
hdac3
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.416
LOC102236362
Histone deacetylase 1; Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
    
 0.400
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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