STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbxtT-box transcription factor Tb. (436 aa)    
Predicted Functional Partners:
LOC102229141
POU domain protein.
   
 0.658
bmp4
Bone morphogenetic protein 4.
     
 0.629
foxa2
Forkhead box A2.
    
 0.608
mixl1
Mix paired-like homeobox.
   
 0.597
gsc
Goosecoid.
   
 0.566
creb3l2
cAMP responsive element binding protein 3-like 2.
      
 0.560
sox17
SRY-box transcription factor 17.
    
 0.559
LOC102233800
Notochord homeobox.
    
 0.542
wnt3a
Protein Wnt; Ligand for members of the frizzled family of seven transmembrane receptors; Belongs to the Wnt family.
   
 0.535
nkx2-5
NK2 homeobox 5.
    
 
 0.528
Your Current Organism:
Xiphophorus maculatus
NCBI taxonomy Id: 8083
Other names: Platypoecilus maculatus, X. maculatus, southern platyfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.