STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tadZType II secretion system protein Z. (411 aa)    
Predicted Functional Partners:
tadC
Bacterial type II secretion system protein F.
 
   
 0.948
tadB
Bacterial type II secretion system protein F.
 
   
 0.946
flhF
Flagellar biosynthesis protein FlhF.
  
 
 0.942
tadA
Type II/IV secretion system protein, ATP binding domain.
 
  
 0.925
MVIS_0926
Type II/III secretion system protein; Belongs to the bacterial secretin family.
 
     0.919
MVIS_0927
Putative lipoprotein.
       0.793
MVIS_0923
Fimbrial protein, Flp/Fap pilin component.
       0.790
tadC-3
Bacterial type II secretion system protein F.
 
  
 0.789
rcpC
Putative Flp pilus assembly protein.
       0.784
tadD
Putative secretion system protein.
       0.784
Your Current Organism:
Moritella viscosa
NCBI taxonomy Id: 80854
Other names: ATCC BAA-105, M. viscosa, Moritella viscosa (Lunder et al. 2000) Benediktsdottir et al. 2000, NCIMB 13584, Vibrio viscosus, Vibrio viscosus Lunder et al. 2000, strain NVI 88/478
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.