STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam50aFamily with sequence similarity 50 member A. (333 aa)    
Predicted Functional Partners:
slu7
SLU7 homolog, splicing factor.
   
 
  0.844
c9h9orf78
Zgc:103692.
    
 0.695
NKAPL
NFKB activating protein like.
   
 
  0.690
ALYREF
Aly/REF export factor.
   
  0.686
sde2
SDE2 telomere maintenance homolog (S. pombe).
     
 0.668
fam32a
Family with sequence similarity 32 member A.
    
  0.667
cdc40
Cell division cycle 40 homolog (S. cerevisiae).
   
 
  0.664
ccdc12
Coiled-coil domain containing 12.
     
 0.660
cwc22
CWC22 spliceosome associated protein homolog.
    
  0.659
DDX41
Uncharacterized protein.
   
 
  0.655
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.