card14 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

card14

Caspase recruitment domain family, member 14. (972 aa)

Predicted Functional Partners:

tbc1d16

0.801

LOC101172563

0.791

cask

0.791

dgke

0.778

tbc1d1

0.703

shank3

0.661

pcgf5

0.645

LOC101169874

0.624

LOC101175170

0.624

nme5

0.603

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101169874	LOC101172563	ENSORLP00000017802	ENSORLP00000006053	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.885
LOC101169874	LOC101175170	ENSORLP00000017802	ENSORLP00000027549	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Uncharacterized protein.	0.543
LOC101169874	card14	ENSORLP00000017802	ENSORLP00000002349	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Caspase recruitment domain family, member 14.	0.624
LOC101169874	cask	ENSORLP00000017802	ENSORLP00000031235	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	Uncharacterized protein; Belongs to the MAGUK family.	0.885
LOC101172563	LOC101169874	ENSORLP00000006053	ENSORLP00000017802	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.885
LOC101172563	LOC101175170	ENSORLP00000006053	ENSORLP00000027549	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	Uncharacterized protein.	0.885
LOC101172563	card14	ENSORLP00000006053	ENSORLP00000002349	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	Caspase recruitment domain family, member 14.	0.791
LOC101172563	cask	ENSORLP00000006053	ENSORLP00000031235	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	Uncharacterized protein; Belongs to the MAGUK family.	0.785
LOC101172563	shank3	ENSORLP00000006053	ENSORLP00000041483	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	SH3 and multiple ankyrin repeat domains 3a.	0.636
LOC101175170	LOC101169874	ENSORLP00000027549	ENSORLP00000017802	Uncharacterized protein.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.543
LOC101175170	LOC101172563	ENSORLP00000027549	ENSORLP00000006053	Uncharacterized protein.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.885
LOC101175170	card14	ENSORLP00000027549	ENSORLP00000002349	Uncharacterized protein.	Caspase recruitment domain family, member 14.	0.624
LOC101175170	cask	ENSORLP00000027549	ENSORLP00000031235	Uncharacterized protein.	Uncharacterized protein; Belongs to the MAGUK family.	0.885
card14	LOC101169874	ENSORLP00000002349	ENSORLP00000017802	Caspase recruitment domain family, member 14.	Glutamate receptor, ionotropic, N-methyl D-aspartate 1a.	0.624
card14	LOC101172563	ENSORLP00000002349	ENSORLP00000006053	Caspase recruitment domain family, member 14.	Calcium/calmodulin-dependent serine protein kinase b; Belongs to the MAGUK family.	0.791
card14	LOC101175170	ENSORLP00000002349	ENSORLP00000027549	Caspase recruitment domain family, member 14.	Uncharacterized protein.	0.624
card14	cask	ENSORLP00000002349	ENSORLP00000031235	Caspase recruitment domain family, member 14.	Uncharacterized protein; Belongs to the MAGUK family.	0.791
card14	dgke	ENSORLP00000002349	ENSORLP00000002290	Caspase recruitment domain family, member 14.	Diacylglycerol kinase.	0.778
card14	nme5	ENSORLP00000002349	ENSORLP00000006669	Caspase recruitment domain family, member 14.	NME/NM23 family member 5; Belongs to the NDK family.	0.603
card14	pcgf5	ENSORLP00000002349	ENSORLP00000004640	Caspase recruitment domain family, member 14.	Polycomb group ring finger 5a.	0.645