STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BTF3L4Transcription factor BTF3; Belongs to the NAC-beta family. (159 aa)    
Predicted Functional Partners:
NACA
NAC-A/B domain-containing protein.
   
 
 0.947
rpl31
Ribosomal protein L31.
   
 
 0.925
rpl23a
Ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.918
LOC101166002
NAC alpha domain containing.
   
 
 0.906
rpl21
Ribosomal protein L21.
   
   0.858
rpl14
Ribosomal protein L14.
   
 
 0.854
LOC101160979
Ribosomal protein L10.
   
 
 0.851
Rpl35
Ribosomal protein L35.
   
   0.839
rpl17
Ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.837
rpl32
Ribosomal protein L32.
   
   0.831
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.