LOC101173805 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101173805

Glutamate receptor, metabotropic 5a. (1179 aa)

Predicted Functional Partners:

LOC101168718

0.936

LOC101161353

0.936

LOC101158934

0.936

LOC101167719

0.910

grm1

0.909

GNAS

0.904

LOC101166373

0.904

grm5

0.901

HOMER1

0.879

LOC101163175

0.879

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GNAS	LOC101158934	ENSORLP00000004563	ENSORLP00000021128	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	0.909
GNAS	LOC101161353	ENSORLP00000004563	ENSORLP00000017728	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	0.419
GNAS	LOC101166373	ENSORLP00000004563	ENSORLP00000007194	Uncharacterized protein.	GNAS complex locus.	0.900
GNAS	LOC101167719	ENSORLP00000004563	ENSORLP00000005961	Uncharacterized protein.	Uncharacterized protein.	0.907
GNAS	LOC101168718	ENSORLP00000004563	ENSORLP00000007128	Uncharacterized protein.	Uncharacterized protein.	0.909
GNAS	LOC101173805	ENSORLP00000004563	ENSORLP00000005680	Uncharacterized protein.	Glutamate receptor, metabotropic 5a.	0.904
GNAS	grm1	ENSORLP00000004563	ENSORLP00000017803	Uncharacterized protein.	Glutamate receptor, metabotropic 1a.	0.904
GNAS	grm5	ENSORLP00000004563	ENSORLP00000041487	Uncharacterized protein.	Glutamate receptor, metabotropic 5b.	0.904
HOMER1	LOC101173805	ENSORLP00000003073	ENSORLP00000005680	Homer scaffold protein 1.	Glutamate receptor, metabotropic 5a.	0.879
HOMER1	grm1	ENSORLP00000003073	ENSORLP00000017803	Homer scaffold protein 1.	Glutamate receptor, metabotropic 1a.	0.987
HOMER1	grm5	ENSORLP00000003073	ENSORLP00000041487	Homer scaffold protein 1.	Glutamate receptor, metabotropic 5b.	0.879
LOC101158934	GNAS	ENSORLP00000021128	ENSORLP00000004563	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Uncharacterized protein.	0.909
LOC101158934	LOC101166373	ENSORLP00000021128	ENSORLP00000007194	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	GNAS complex locus.	0.909
LOC101158934	LOC101167719	ENSORLP00000021128	ENSORLP00000005961	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Uncharacterized protein.	0.901
LOC101158934	LOC101168718	ENSORLP00000021128	ENSORLP00000007128	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Uncharacterized protein.	0.900
LOC101158934	LOC101173805	ENSORLP00000021128	ENSORLP00000005680	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Glutamate receptor, metabotropic 5a.	0.936
LOC101158934	grm1	ENSORLP00000021128	ENSORLP00000017803	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Glutamate receptor, metabotropic 1a.	0.936
LOC101158934	grm5	ENSORLP00000021128	ENSORLP00000041487	Guanine nucleotide binding protein (G protein), alpha 11a (Gq class).	Glutamate receptor, metabotropic 5b.	0.936
LOC101161353	GNAS	ENSORLP00000017728	ENSORLP00000004563	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	Uncharacterized protein.	0.419
LOC101161353	LOC101166373	ENSORLP00000017728	ENSORLP00000007194	Guanine nucleotide binding protein (G protein), alpha 11b (Gq class).	GNAS complex locus.	0.419