STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hnf1bHNF1 homeobox Ba. (555 aa)    
Predicted Functional Partners:
hnf1a
HNF1 homeobox a.
  
 
0.772
LOC101158859
Phosphate transporter; Sodium-phosphate symporter which plays a fundamental housekeeping role in phosphate transport. Belongs to the inorganic phosphate transporter (PiT) (TC 2.A.20) family.
      
 0.569
ptf1a
Pancreas associated transcription factor 1a.
     
 0.549
cdh17
Cadherin 17, LI cadherin (liver-intestine).
   
  
 0.536
LOC101164395
Solute carrier family 5 member 8, like; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
   
  
 0.534
LOC101155219
Paired domain-containing protein.
   
 
 0.524
LOC101162560
Hepatocyte nuclear factor 4, gamma.
   
 0.482
hnf4a
Hepatocyte nuclear factor 4, alpha.
   
 0.482
pdx1
Pancreatic and duodenal homeobox 1.
   
  
 0.460
Pcbd1
Pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha.
    
 
 0.446
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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