STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc6a11Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family. (609 aa)    
Predicted Functional Partners:
pdzk1
PDZ domain containing 1.
    
 
 0.561
adprhl1
ADP-ribosylhydrolase like 1.
      
 0.560
LOC101166733
Monoacylglycerol O-acyltransferase 3b.
   
  
 0.514
Htr1a
5-hydroxytryptamine receptor 1A.
      
 0.503
slc30a9
Solute carrier family 30 member 9.
  
  
 0.438
myh11
Myosin, heavy chain 11a, smooth muscle; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
      
 0.422
LOC101166698
Protein kinase domain-containing protein.
      
 0.422
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.