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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2LNA0_ORYLAUncharacterized protein. (479 aa)    
Predicted Functional Partners:
Muc5ac
VWFD domain-containing protein.
 
0.917
ENSORLP00000035826
VWFD domain-containing protein.
 
    
0.907
H2LNI0_ORYLA
Uncharacterized protein.
 
     
0.897
MSL3
MSL complex subunit 3.
    
 0.746
Muc2
Uncharacterized protein.
 
    
0.745
ENSORLP00000043175
Uncharacterized protein.
 
      0.602
LOC101156373
MSL complex subunit 2.
    
 0.585
MSL2
MSL complex subunit 2.
    
 0.585
maml1
Mastermind-like transcriptional coactivator 1.
   
 0.566
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 0.562
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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