STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrmdaLeucine rich melanocyte differentiation associated. (233 aa)    
Predicted Functional Partners:
snrpe
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.943
snrpd3
Small nuclear ribonucleoprotein Sm D3.
   
 0.934
snrpd2
Small nuclear ribonucleoprotein Sm D2.
   
 0.929
snrpg
Small nuclear ribonucleoprotein G.
   
 0.922
sf3a3
Splicing factor 3a, subunit 3.
   
 0.921
sf3a1
Splicing factor 3a, subunit 1.
   
 0.908
sf3b1
Splicing factor 3b, subunit 1.
   
 0.908
sf3b3
Splicing factor 3b, subunit 3.
    
 0.906
phf5a
PHD finger protein 5A.
   
 0.905
sf3b2
Splicing factor 3b, subunit 2.
   
 0.898
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.