STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arid2AT rich interactive domain 2 (ARID, RFX-like) (1647 aa)    
Predicted Functional Partners:
ENSORLG00000013923
Bromodomain containing 7
   
 
 0.972
pbrm1
Polybromo 1
   
 
 0.881
ENSORLG00000001099
Uncharacterized protein; Polybromo 1, like
   
 
 0.881
ENSORLG00000018634
Uncharacterized protein
   
 
 0.881
ENSORLG00000018700
Uncharacterized protein; Polybromo 1, like
   
 
 0.881
ENSORLG00000018988
Uncharacterized protein; Polybromo 1, like
   
 
 0.881
ENSORLG00000019713
Uncharacterized protein; Polybromo 1, like
   
 
 0.881
ENSORLG00000019814
Uncharacterized protein; Polybromo 1, like
   
 
 0.881
ENSORLG00000008087
Bromodomain containing 9
   
 
 0.877
ENSORLG00000015887
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1a
   
 
 0.877
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Oryzias latipes, Poecilia latipes, medaka
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