STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankrd50Ankyrin repeat domain 50-like. (1400 aa)    
Predicted Functional Partners:
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
 
 0.814
wdr11
WD repeat domain 11.
     
 0.653
LOC101171716
Serine/threonine-protein phosphatase.
    
 0.586
PPP6C
Serine/threonine-protein phosphatase.
    
 0.586
LOC101170859
DEAQ box RNA-dependent ATPase 1.
   
 0.581
SEMA4F
Ssemaphorin 4F; Belongs to the semaphorin family.
    
 
 0.567
ppp6r2
Protein phosphatase 6, regulatory subunit 2a.
    
 0.553
ppp6r3
Protein phosphatase 6, regulatory subunit 3.
    
 0.553
LOC101175152
Protein phosphatase 6, regulatory subunit 2b.
    
 0.553
poll
Polymerase (DNA directed), lambda; Belongs to the DNA polymerase type-X family.
      
 0.536
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.