STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tomm40Translocase of outer mitochondrial membrane 40 homolog (yeast). (342 aa)    
Predicted Functional Partners:
TOMM7
Translocase of outer mitochondrial membrane 7.
    
 0.965
LOC101169311
Translocase of outer mitochondrial membrane 20.
   
 0.961
LOC101172049
Translocase of outer mitochondrial membrane 20b.
   
 0.961
tomm22
Translocase of outer mitochondrial membrane 22 homolog (yeast).
   
 0.960
tomm5
Translocase of outer mitochondrial membrane 5 homolog (yeast).
   
 0.949
tomm70
Translocase of outer mitochondrial membrane 70 homolog A (S. cerevisiae).
    
 0.945
samm50
SAMM50 sorting and assembly machinery component.
    
 0.931
LOC101164364
Sorting and assembly machinery component 50 homolog, like.
    
 0.931
LOC101163689
Metaxin.
   
 0.929
tomm6
Translocase of outer mitochondrial membrane 6 homolog (yeast).
    
 0.929
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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