STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mmp2Uncharacterized protein. (657 aa)    
Predicted Functional Partners:
mmp14
ZnMc domain-containing protein.
  
0.953
LOC101171699
Matrix metallopeptidase 14a (membrane-inserted).
  
0.931
LOC101156096
Heparin-binding EGF-like growth factor a.
    
 0.918
timp2
Tissue inhibitor of metalloproteinase-2a.
   
 0.777
timp-2b
Tissue inhibitor of metalloproteinase-2b.
   
 0.684
timp3
NTR domain-containing protein.
   
 0.659
dcn
Decorin; May affect the rate of fibrils formation.
   
 0.617
mmp15
ZnMc domain-containing protein.
   
0.536
mmp9
Uncharacterized protein.
  
0.512
LOC101173094
G protein-coupled receptor, class C, group 5, member C.
      
 0.505
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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