STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tulp4TUB like protein 4a; Belongs to the TUB family. (1773 aa)    
Predicted Functional Partners:
rnf7
Ring finger protein 7.
    
  0.608
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.598
LOC101154889
Cullin 5; Belongs to the cullin family.
    
 0.598
ELOB
Ubiquitin-like domain-containing protein.
    
  0.588
pde4b
Phosphodiesterase.
      
 0.566
eprs1
Glutamyl-prolyl-tRNA synthetase.
      
 0.560
LOC101161115
TIP120 domain-containing protein.
   
 
 0.539
cand1
Cullin-associated and neddylation-dissociated 1.
   
 
 0.539
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
    
  0.512
greb1l
GREB1 like retinoic acid receptor coactivator.
      
 0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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