STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
esrrbUncharacterized protein. (477 aa)    
Predicted Functional Partners:
ppargc1a
Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.
   
 0.779
nrip1
Nuclear receptor interacting protein 1b.
    
 0.669
LOC100049520
POU domain protein.
   
 0.644
ncor1
Nuclear receptor corepressor 1.
    
 0.628
ncor2
Nuclear receptor corepressor 2.
    
 0.628
sall4
Spalt-like transcription factor 4.
    
 0.601
nanog
Homeobox domain-containing protein.
    
 
 0.592
LOC101169121
Peroxisome proliferator-activated receptor gamma, coactivator 1 beta.
    
 0.585
klf4
Kruppel-like factor 4.
    
 0.574
LOC100125507
Estrogen-related receptor alpha.
  
 
 
0.573
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.